FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878860

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878860
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28106
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8202.917526506795702No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1390.4945563224934178No Hit
CTTCTGAAGTTGACATGAATTCTCCTAAATCCAAAAAGGCAAAAAAGAAAGAGGAGCCATCTCAAAATGAC480.17078203942218745No Hit
GCTACATTTGAAGCCTGTACAAAAGCTTATCCCTGTAACACATGTGCCATAATATACAAACTTCTACTTTC400.1423183661851562No Hit
GTACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCCAAAGATAAAAGGTTTCTTTTTTTTTCCTT390.13876040703052728No Hit
GAATGGGGGAAGAGGAGGAGCAGGAGGCCCTCATCCTTCTGCTGCCCTGGGGTTGGGGCCTCACCCCTCTG370.13164448872126946No Hit
ATGGAAGACTTGGACCGGAACAAGGACCAGGAGGTGAACTTCCAGGAGTATGTCACCTTCCTGGGGGCCTT350.12452857041201167No Hit
GTTTTCATATCTAGTAGTCATTTTAGGGAAAGTGATAATCTGTAGAATGAATAGTTATGTTTTGATATGAC350.12452857041201167No Hit
GCTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGATCACCATTGCTGACTGTGGACAACTCGAATAAGTT340.12097061125738277No Hit
CCTTGTAGAGAGAGTAAAAAATTTAACACCCATAGTAGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTC330.11741265210275385No Hit
GTCTCAGAACTGTTTGTTTCAATTGGCCATTTAAGTTTAGTAGTAAAAGACTGGTTAATGATAACAATGCA320.11385469294812496No Hit
AAGTTTTTCTTGCTTATAGTTAATTCTAGAAAGGCAATACTAAAGGTATATATTTTTTTCAAAATGCTATT310.11029673379349604No Hit
GCATAAGCCTGCGTCAGATTAAAACACTGAACTGACAATTAACAGCCCAATATCTACAATCAACCAACAAG300.10673877463886715No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)