FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35852
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6071.693071516233404No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1540.429543679571572No Hit
TAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACTTAAACAGCTTAAAGTTTAGTTTAAAAGTTGTAG720.20082561642307262No Hit
GTCTTTAGCCATGCACAAACGGTAGTTTTGTGTGTTGGCTGCTCCACTGTCCTCTGCCAGCCTACAGGAGG710.19803637175052996No Hit
GTATATCTTCCATGTAAATATTATTTTCATCTTGTCTTTTTTTAAGGTTAAATTTCAACATGTTATTTTCT670.18687939306035925No Hit
GTGTTATTCACTTTCAGGAGATTTATGTTTAAGTATATCTTCCATGTAAATATTATTTTCATCTTGTCTTT640.17851165904273122No Hit
GATCTATACTGTTGGAAAACGCTTCAAAGAGGCAAATAACTTCCTGTGGCCCTTCAAATTGTCTTCTCCAC500.13946223362713378No Hit
GGTGATTAAAATAATTTGAAGGCGATCTTTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAA490.1366729889545911No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATG430.11993752091933504No Hit
GGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGGACATTTAACTAAAACC410.11435903157424969No Hit
GTTGTAGGTGATTAAAATAATTTGAAGGCGATCTTTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACC410.11435903157424969No Hit
AGCATGCTGTTGGCATTGTTGTAAACAAACAAGTTAAGGGCAAGATTCTTGCCAAGAGAATTAATGTGCGT390.10878054222916433No Hit
GCTCCACTGTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCTTACAGAAGGATGTTCCTTCAGGAGGAAG370.10320205288407899No Hit
CATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATA370.10320205288407899No Hit
GTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATAT360.10041280821153631No Hit
AGATAAAAGGTTTCTTTTTTTTTCCTTTTTTGTCTATGAAGTTGCTGTTTATTTTTTTTGGCCTGTTTGAT360.10041280821153631No Hit
CATTTTACTACTTTCAAATCACATCCTCTTTTTGATGTTGCCCAGTGTTATTCACTTTCAGGAGATTTATG360.10041280821153631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)