FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002878866

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002878866
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31064
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5631.8123873293844965No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1250.40239505536955966No Hit
CTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTC570.1834921452485192No Hit
GTTCATTATAATCTCAAAGGAGAAAAAAAACCTTGTAAAAAAAGCAAAAATGACAACAGAAAAACAATCTT450.14486221993304146No Hit
CTTATAGACATGCCAAATGCTGGCAAAAAGAAGTGCTTTTTGGATATGGCAGCACTTGTAAAAATAAAGCA450.14486221993304146No Hit
GCTATAATGGGATTCATTGGCTTCTTTGTGAAATTGATCCATATTCCTATTAATAACATCATTGTTGGTGG390.1255472572753026No Hit
GCTTACTACAGCCTCAAACTTCTGGGCTCAAGTGATCCTCAGCCTCCCAGTGGTCTTTGTAGACTGCCTGA380.12232809683234613No Hit
GGCAAAGAGGAACTGCTGGCCACGAGTACGGGGTGTGGCCATGAATCCTGTGGAGCATCCTTTTGGAGGTG380.12232809683234613No Hit
ATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCCTGCGTCAGATTAAAA370.11910893638938966No Hit
GTGAAATCTAGAGTAAAACCAAGCTGGCCCAAGGTGTCCTGCAGGCTGTAATGCAGTTTAATCAGAGTGCC370.11910893638938966No Hit
CTTGTGACTGTTTCCTTTTCATGAGACACCGTGTTGATAGAGAAAAAATTGGGAGGAAAAAAATCCCTGAG370.11910893638938966No Hit
AAATTGGCAGGGAGCAATTGACAGTTGTTTAGAGGCTCTTGAACTAGACCCATCAAATACCAAAGCATTGT340.10945145506052023No Hit
TGGGTTAACTCAGTAGTTAGATCAAAGCAAATGTGGACTGAATCTGCTTGTTGATCAGTGTTGAAGAAAGT340.10945145506052023No Hit
GGCTCAACAAAGCTGTCTGGGCCAAAGGAATAAGGAATGTGCCATACCGAATCCGTGTGCGGCTGTCCAGA330.10623229461756376No Hit
GCTATTGAGAGTATCTAGTTAATCAGTGCAGTAGTTGGAAACCTTGCTGGTGTATGTGATGTGCTTCTGTG330.10623229461756376No Hit
GCCCTGGACTTGTTCTCAGAGGTATCAGGAAAGGCTTTCTGTTTTGATCTGGAGCTGTAAGGGTCACATAA320.10301313417460728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)