FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002879165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002879165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences138505
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG16971.2252265261181905No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGACCCGTATTTACCCTATAG3710.2678603660517671No Hit
TTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGGCGAGGGTTCGAGGGCACGAGTTCGA3330.2404245334103462No Hit
TCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGGC3330.2404245334103462No Hit
GACTTACACTTAGGAGATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAA1940.1400671455904119No Hit
CCCTCAGGGTAGGCGAGGGTTCGAGGGCACGAGTTCGAGGCCAACCTGGTCCACATGGGTTGAAAAAAAAA1930.13934514999458503No Hit
AACTTACACTTAGGAGATTTCAACTTAACTTGACCGCTCTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAA1920.13862315439875816No Hit
TTCCCTACACGACGCGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGACCCTCAGGGTAGG1650.1191292733114328No Hit
GGGTAGGCGAGGGTTCGAGGGCACGAGTTCGAGGCCAACCTGGTCCACATGGGTTGAAAAAAAAAAAAAAA1600.11551929533229847No Hit
TCCCTACACGACGCGGGGGACTATGAGAATCGAACCCATCCCTGAGAATCCAAAATTCTCCGTGCCACCTA1480.10685534818237609No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAA1420.1025233746074149No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)