FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002879256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002879256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences89836
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA16071.7888151743176457No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5780.6433946302150585No Hit
CCATTATGCAGAATCCACGCCAGTACAAGATCCCAGACTGGTTCTTGAACAGACAGAAGGATGTAAAGGAT920.10240883387506122No Hit
CATTACTGCAGGCCACCTACTCATGCACCTAATTGGAAGCGCCACCCTAGCAATATCAACCATTAACCTTC920.10240883387506122No Hit
GTTCTTGGAGGTCGGCAAATGCATTGGCCTCCTGGTTAAGCACGTTTTGGGGATAATTTTCTCTTCTTTAG910.10129569437641926No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)