FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002879267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002879267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34482
Sequences flagged as poor quality0
Sequence length71
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6181.7922394292674437No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG900.26100574212632677No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG670.19430427469404327No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATG620.17980395568702512No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAA560.16240357287860333No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAACATAAA510.14790325387158518No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCT440.12760280726175974No Hit
CCCTAATTCTTATTTTATAATTTTAAAATTGCAGCAGTTGCTAGCAACAACTTACTAAATCTACTCTTAAA410.11890261585754885No Hit
TCCATATACAGTGTGTTTAAGGTTGCAGCAATACAGCAAATCCTAGGCAAATATAAGGAGGCTGTAGCTCA410.11890261585754885No Hit
GGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAA400.11600255205614524No Hit
CTCTAAGGTCTAGGGTTGATATTAACAAAGGAATGTACTTAGAATAGCAGTACATTTTATGCAAATATGGA390.1131024882547416No Hit
GTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAGCACCCCCTCTACCC370.10730236065193434No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)