FastQCFastQC Report
Fri 2 Sep 2022
EGAF00002879284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002879284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences331884
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA35481.0690482216678117No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9330.2811223198466934No Hit
CTCTTTCCCTACACGACACTCTTTCCCTACACGACACTCTTTCCCTACACGACACTCTTTCCCTACACGAC5730.172650685179159Illumina Single End PCR Primer 1 (96% over 26bp)
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG5260.15848911065311977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)