FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002879363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002879363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27592
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7902.8631487387648593No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG930.337054218614091No Hit
CATCAAGGGAATGGGTACTGTTCAAAAAGGAATGCCCCACAAGTGTTACCATGGCAAAACTGGAAGAGTCT800.2899391127863149No Hit
GGGAAGGAAAGAACTTGCATGTTGGTGAAGGAAGAAGTGGGGTGGAAGAAGTGGGGTGGGACGACAGTGAA610.2210785734995651No Hit
GTCTAGAGCTTGTCTCAATGGATCTAGAACTTCATCGCCCTCTGATCGCCGATCACCTCTGAGACCCACCT390.14134531748332851No Hit
GACCATTGCTGAGTGCCTGGCAGATGAGCTCATCAATGCTGCCAAGGGCTCCTCGAACTCCTATGCCATTA370.13409683966367061No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG360.1304726007538417No Hit
TCTCTAGGCCTTTTAGAAAACATGGAGTTGTTCCTTTGGCCACATATATGCGAATCTATAAGAAAGGTGAT350.12684836184401277No Hit
GTTTTTCACTCTAAAAATTCAAGAGGACACGCTAAGAACGATCATTGCTATTTATCTGTCTTAAATTAGAA350.12684836184401277No Hit
GACATGAATACATTTCCCACCTTCAAATTTGAAGATCCCAAATTTGAAGTCATCGAAAAACCCCAGGCCTG300.10872716729486809No Hit
GTTCAAAAAGGAATGCCCCACAAGTGTTACCATGGCAAAACTGGAAGAGTCTACAATGTTACCCAGCATGC290.10510292838503915No Hit
GGCATTTTTTCCAGAGTGGTGCAGTACCACTGAGGACTGTTGCTGTATTGATTAGGAAAAGAGACAGAGTA290.10510292838503915No Hit
GTATTCAATATAATGCATTGTTTGGTTTCTTTTACCAAATTAAGTGTCTAGTTCTTGCTAAAATCAAGTCA290.10510292838503915No Hit
ACATTTTCTTCTGAAGGCAAAATGCTTGTAGGTTTTGCCTCTACTTTGTATTTACTTTTAAAATTGCACTT280.1014786894752102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)