FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002879393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002879393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27931
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8813.1542014249400308No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG640.2291360853531918No Hit
GTATAATAATTACATCACAAGACGTCTTGCACTCATGAGCTGTCCCCACATTAGGCTTAAAAACAGATGCA310.11098779134295228No Hit
CATATATATCTGAACATATAAACATTTAAGATTATTTAAGATTATATATGTAATCTTAAATTATGCATATT280.10024703734202141No Hit
ATTTAAAGCCTAGTTAACGCATTTACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATG280.10024703734202141No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)