FastQCFastQC Report
Fri 2 Sep 2022
EGAF00002879825

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002879825
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429588
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA49651.1557585407413615No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10760.2504725457880574No Hit
TTATTTTAGTGTGTAAAATTAATGTAATAAAGTGAACTTTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAA5320.12383958583573097No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG5200.12104621171913554No Hit
CACCAATACCATGACATTGGGTGACATTGTCTTCAAGAGAATCAGCAAGAGAATTTAAACAAGTCTGCATT5080.11825283760254011No Hit
ATTTTAGTGTGTAAAATTAATGTAATAAAGTGAACTTTGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA4350.10125981172658455No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)