FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002879865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002879865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences892226
Sequences flagged as poor quality0
Sequence length66
%GC38

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA318813.5731978220764695No Hit
GGTATATGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCAT47660.5341695938024671Illumina Single End PCR Primer 1 (100% over 57bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29060.3257022323940347No Hit
GTATATGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCGTATCATT12020.13471923032953534Illumina Single End PCR Primer 1 (100% over 58bp)
GGTATATGGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGCTCTCGGTGGTCGCCGTATCAT9960.11163090965741863Illumina Single End PCR Primer 1 (98% over 57bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)