FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002879884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002879884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41715
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3800.9109433057653122No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2280.5465659834591874No Hit
CATAATCACCAATACCATGACATTGGGTGACATTGTCTTCAAGAGAATCAGCAAGAGAATTTAAACAAGTC460.11027208438211675No Hit
GTGCCTTGGTGTTTCAAGCCCCTGCAGGAAGCAGAATGCACCTTCTGAGGCACCTCCAGCTGCCCCCGGCC440.10547764593072037No Hit
GTCATAAATATCCTTATATAAGAAAAAAAATGATCTCTTATCAATTAGCACTCACTAATGTACTACTAATT440.10547764593072037No Hit
TCACTACAGTGGCAATAATATTGAACTGGGCACAGCATGCGGAAAATACTACAGAGTGTGCACACTGGCTA430.10308042670502217No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)