FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002879980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002879980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53868
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA21604.009801737580753No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2700.5012252171975942No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG1240.23019232197222841No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAA1150.2134848147323086No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCT1010.1874953590257667No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTC880.1633622930125492No Hit
GTGCTGGAGTGACAGAAGGAAGTCAAGGCACCATTATGACTCGGATGAGAAATCAGAAACAAGAGAAAATG750.1392292269993317No Hit
GTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAAT740.13737283730600727No Hit
CATTTATAGTTACGTTCATTTCAGGTTAAACATGAAAGAAGCCTGGTTACTGATTTGTATAAAATGTACTC610.11323977129278978No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)