FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002880167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002880167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences766778
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG83981.0952322575765085No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA29020.37846677917206806No Hit
GCTTCCTAGATAGAAACCAAAGCAGTGCAAGATTCAGTTCAAGGTCCTGAAAAAAGAAAAACATTTTACTC22630.29513105488159547No Hit
GTCATGGGTATTAACCACAGATTCTGCTGCCTCTGAGGGATGAGAACAGAGAGAAATATATTCATAATTTA11340.14789156705069786No Hit
GTGTACCTTGTGTCTTTCTAAATTTCTCTCTCCAAAATAAAGTTCAAGCATTAAAAAAAAAAAAAAAAAAA10650.13889287381745435No Hit
GTCCTATACATTGCCATCAACTTTGTTTCCTCATCTCAAATAAAGTCCTTTCAGCAAAAAAAAAAAAAAAA9440.12311255669828816No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGACCCGTATTTACCCTATAG8830.11515719021672505No Hit
GTTCAAGGTCCTGAAAAAAGAAAAACATTTTACTCTGTGTACCTTGTGTCTTTCTAAATTTCTCTCTCCAA8120.10589766529556144No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)