FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002880425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002880425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42473
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA6071.4291432203988417No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2100.4944317566453983No Hit
ATCCATACCTGTGCATGAGCTGTATTCTTCACAGCAACAGAGCTCAGTTAAATGCAACTGCAAGTAGGTTA500.11772184682033293No Hit
CTCTTAGGTATGTATGATGCTAATCTTGTCCCTAAGTAAGTTTCTTCCTGCTCCTTTTGTATCTTCCTTTC450.10594966213829964No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)