FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002880519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002880519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32098
Sequences flagged as poor quality0
Sequence length71
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5841.819428001744657No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2030.6324381581406942No Hit
GTAGATGAATGTGTATGTCTAAACAAGGACTGCTCTGTGTCCTCACAGATGAATGAGGTCATGCTGGGAAT420.13084927409807465No Hit
ATATTATACTACTCTAAATAGCATATTTCATCCAAGTGCAATAATGTAAGCTGAATCTTTTTTGGACTTCT360.11215652065549254No Hit
TTATTGGACATAGGACTTTTTCTAAGTCTAATGAGAAAAAAAACAACTGGGCCTTTGTTATTTCTCCCTTT360.11215652065549254No Hit
ACTAAACGCAGACGAAAATGGAAAGATTAATTGGGAGTGGTAGGATGAAACAATTTGGAGAAGATAGAAGT330.1028101439342015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)