FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002880800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002880800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19046
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4572.399453953586055No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG670.3517799012916098No Hit
GTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAGTTCTTTAAGCTGGAAA450.23627008295705135No Hit
ATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTC380.19951695894151003No Hit
CAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAGTTCTTTA350.1837656200777066No Hit
GATTAGGTTATGGTTTAATGTTACAACAACTATTTTTTAAGAAAAACAAGTTTTAGAAATTTGGTTTCAAG220.11550981833455844No Hit
GTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAA210.11025937204662396No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)