FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002880900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002880900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29610
Sequences flagged as poor quality0
Sequence length71
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG860.29044241810199256No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA860.29044241810199256No Hit
CCTTTTAACCTTTACTTTTTTTAAGTTGAAGGTGATACTTTTTCTATATATGATGAAACTCATGTCAACTG500.16886187098953057No Hit
GTCTTGTAAAAGCCCAGATCACTGTGGGCTGGAGAGGAGAAGGAAAGGGTCTGCGCCAGCCCTGTCCGTCT490.16548463356973994No Hit
CTAATAATGTCCTTAAATTTTATTTCCAGCTCCTGTTCCTTGGAAAATCTCCATTGTATGTGCATTTTTTA470.15873015873015872No Hit
TCTTAAAGCTGTGAAAATGACCCTGAAGAACAGAGAACCTGTACAGCTGGAAACGCTGAGTATTCGAGGAA440.1485984464707869No Hit
ACTAAAACCCTGGGATTACATTGGATGAACAAGTTGGAGACTTGGTTAAGATTCCTGTTGCATGGTTGTTA440.1485984464707869No Hit
CTCTAATGTGGAGTGCGACTTGGCCAAAAGAAGTAAGACAGCTTGCTGAAGATTTCCTGAAAGACTATATT430.14522120905099628No Hit
GGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATA400.13508949679162446No Hit
TTTTAATACCTTGTTGATTTCACCAACTGTTGCTGGAAGATTCAAAACTGGAAGCAAAAACTTGCTTGATT380.12833502195204324No Hit
ATTTTAATCTAGCAGTGTTGAAGCTGGGAATTTTTTGGCGCAATCCATGTAGCAGTGACCCAGGCTTGGGA370.12495778453225262No Hit
TCTGAAAAGCCCACTGAAAATTGCCTGTCCTGCTGGTAACTGCTACGGGGTAAGATTTGCCTTAACAGTAC360.12158054711246201No Hit
GCCAGTTCTCAGACACTTAGGGGACATGTTCTCTGCAGGACCACTCTGAGGGACTCTTCTGCATATTGCTG360.12158054711246201No Hit
GTATATGCGTAGTATTTGAGTTGCGAATAAATGTTCCATTTTTGTTTTCTAAAAAAAAAAAAAAAAAAAAA360.12158054711246201No Hit
GTAATAGCCAGACATGAGTATACATTCAGTATCATGGATGAATTTCAGGAGTATACCATGCTGTGTCTGTT350.1182033096926714No Hit
AAACAAAACAGTGGTAGGTTAATGTGTTCAGAAGTCGCTGTCCTTACTACTTTTGCGGAAGTATGGAAGTC340.11482607227288079No Hit
ATCTTGGTGATGCCTTGGACAGCAGCAACTCCATGCAAACCATCCAAAAGACCACCACCCGCCGGATAGTG340.11482607227288079No Hit
ACTATAAGTAGTTGGTTTGTATGAGATGGTTAAAAAGGCCAAAGATAAAAGGTTTCTTTTTTTTTCCTTTT340.11482607227288079No Hit
GTTGTAACTCTGCGTGGACTATGGACAGTCAACAATATGTACTTAAAAGTTGCACTATTGCAAAACGGGTG330.11144883485309016No Hit
GTAGACACTATACATTCAAATTGACATTTAAGACCAAACATCTCTTATGTTATCTTTAATATTACTTTGAA330.11144883485309016No Hit
GACTTTAATCTTGGTGATGCCTTGGACAGCAGCAACTCCATGCAAACCATCCAAAAGACCACCACCCGCCG320.10807159743329957No Hit
GTATTTGAGTTGCGAATAAATGTTCCATTTTTGTTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA320.10807159743329957No Hit
ATATAAAATGTATTCAAGCAAACATCAAATAAATTTCTGGGATATTTAAAAAAAAAAAAAAAAAAAAAAAA320.10807159743329957No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACG320.10807159743329957No Hit
AGTGGGACTGGTGTGCTTCCAGAGAGTGTCTTCGAGGGTATCATCATTTCCGGTTTGTTAATCTTATTCAC310.10469436001350894No Hit
GTATAACATTCACCTGGCTGTCAACTTCTTGGTGTCATTGCTCAAGAAAAACTGGCAGAATGTCCGGGCCT310.10469436001350894No Hit
GATTGTAACAGGTTTCCAGATGATTAATTAGGTCAAAGTTCAATGAATGGCACGCCAGCATTGAAAATTAA310.10469436001350894No Hit
AACCCTGGGATTACATTGGATGAACAAGTTGGAGACTTGGTTAAGATTCCTGTTGCATGGTTGTTAAATGT310.10469436001350894No Hit
CTTATACATTAACTTACCACAGTGCTATCAATTAAAGATTGTAACAGGTTTCCAGATGATTAATTAGGTCA310.10469436001350894No Hit
GTTCGTGCTGTAAGACCTAAAGTTCTTATGAGATTGTCCAAAACAAAGAAACATGTCAGCAGGGCCTATGG310.10469436001350894No Hit
CTTGAACTGAGTGCAAACCACAACATTCTTCAGATTGTGGATGTGTGTCATGACGTAGAAAAGGATGAAAA310.10469436001350894No Hit
ATTCATGAGATCTATACTGTTGGAAAACGCTTCAAAGAGGCAAATAACTTCCTGTGGCCCTTCAAATTGTC300.10131712259371835No Hit
CTCTACTAAAAATACAAAAATTAGCCAGGCATAGTGGCACGTGCCTGTAATCCCAACTACTCGGGTGGCTG300.10131712259371835No Hit
CTACAACAATTTGTCTGCCTCCAAGGTCCTCTGAGGCAGCAGGCTCTGGGGCTTCTGCTGTCCTTTGGAGG300.10131712259371835No Hit
ACATGGTTGTCCATTCTGGGGCTTAAAGAACTGGGACCAGACCAAGTAGAGGCCTTGGTGCTGGTTGGGGT300.10131712259371835No Hit
GCTTAAAGTTTAGTTTAAAAGTTGTAGGTGATTAAAATAATTTGAAGGCGATCTTTTAAAAAGAGATTAAA300.10131712259371835No Hit
GTTGTAGGTGATTAAAATAATTTGAAGGCGATCTTTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACC300.10131712259371835No Hit
CAGTGGGAATATCACTTTTGATGAGATTGTCAACATTGCTCGACAGATGCGGCACCGATCCTTAGCCAGAG300.10131712259371835No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)