FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002880916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002880916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4960
Sequences flagged as poor quality0
Sequence length66
%GC18

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA233547.07661290322581No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG220.4435483870967742No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCC160.3225806451612903No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA110.2217741935483871No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAAC80.16129032258064516No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC80.16129032258064516No Hit
GTTTCTGTATACAGCTGTGTTGCTTTTGATGTTGTGTTACTGTACACAGAAGTGTGTGCACTGAGG60.12096774193548387No Hit
GTATAGAATTTGTATAATTAGGTGTATTTTATTTGCGTCTAGCTTTGAGGTATCATAATTTATGTA50.10080645161290322No Hit
AACGGTAGTTTTGTGTGTTGGCTGCTCCACTGTCCTCTGCCAGCCTACAGGAGGAAAAGCAAGGCT50.10080645161290322No Hit
ATGATCATCTTGTGTTGTAACTTTTCAGCTCACTTGTATATACGCATGTTTTCATTTTTGGTCTAG50.10080645161290322No Hit
ACCCTGTCTCTACTAAAAATACAAAAAAAAATTAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCA50.10080645161290322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)