FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002881081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002881081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18582
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8134.375201808201485No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG770.4143795070498332No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG490.2636960499408029No Hit
GATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCAAGATAGAATCTTAGTTC280.15068345710903025No Hit
GATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATATGAAGACTT250.13453880099020557No Hit
GGAAGGGAGAGTGAGCTGGAATGGAGAATGGTACGGAATGGAGAATGAAATGGAATGAAGTGGAGAATGGA230.12377569691098914No Hit
GGATCAAAGTGGCTGCAGCAGAGTTAGCTGTCTAGCGCCTAGCAAGGTGCCTTTGTACCTCAGGTGTTTTA210.11301259283177267No Hit
GTATAATAAACTGCTTATTTTTTTACATACTTCATATCAAGCATTTTGCAGTCCAATTATATAGTTGAGGA210.11301259283177267No Hit
ATGTAAAAATTAGGTCATGTACATTTTCATATTAGACTTTTTGTTAAATAAACTTTTGTAATAGTCAAAAA210.11301259283177267No Hit
GGTGATTAAAATAATTTGAAGGCGATCTTTTAAAAAGAGATTAAACCGAAGGTGATTAAAAGACCTTGAAA210.11301259283177267No Hit
TCTGTGGATATCCCCTTGGACAAAACTGTCGTCAATAAGGATGTCTTCAGAGATCCTGCTCTTAAACGCAA210.11301259283177267No Hit
TCTATAAGAAGGAGAAAGCTCGAGTCATCACTGAGGAAGAGAAGAATTTCAAAGCCTTCGCTAGTCTCCGT200.10763104079216446No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCT200.10763104079216446No Hit
ACTTTGCAGTAAGCGAACAGATCTTTGTGACCATGCCCTGCACATATCGCATGATGAGCTATGAACCACTG200.10763104079216446No Hit
GTCATAAGACGGCGTCGGTGTTGCAGTCTGTGTCCTTGGAGGTGACCAGGGCCACTGCAGGCATGGTGCTA190.10224948875255625No Hit
GTATATATAGCTTCCCACAGATAAGATTATAAATGTAATAAAATAAATTGACTAATCAACTACCAATAGAA190.10224948875255625No Hit
TTTCTGTATAGGATGTTGTTTGGTTTGTTTCTGAGTGTTTAAATTTTGCAAAAACAAATGTTAAATTTGTG190.10224948875255625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)