FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002881445

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002881445
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9955
Sequences flagged as poor quality0
Sequence length71
%GC33

[WARN]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA680.683073832245103No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG360.3616273229532898No Hit
TATCTATTCAAGGAAATAAACAACAGCTCATTAAAAGGCACCAAGAATTTGTACACATGTACAATGCCCAA150.15067805123053743No Hit
GTACAATTTGATTTTGAACTAAGATTTGATATAGAGTTGTAATTGCTTACATAACTCTTTGAAAATGTATC150.15067805123053743No Hit
GTTATTATTTGGCATGCTTAAATATTGAATAAGTATTCTTCATCAGCATTTAATAAATGTATAGGCAGATG150.15067805123053743No Hit
GTTTCAAGCAGAACATTTACAAATTTGGCTCATATTCTGAGCCTAAAACAAATCTTGATAAATTTCTAATT150.15067805123053743No Hit
GTCTATAAGATATGGTCAAGTACAGCTCTGTGAAAGTTCTGATTCTCTTCCTTCCCTGTTTGTCAATGTTT140.14063284781516827No Hit
CCCCCAGAAAATTGTGCCAAAGAGTTTAGAAAAATAAATATACAATAAAAGTAAACACATACACACAAAAC120.12054244098442994No Hit
TCTTAGAGCCAAAAAACTGGAGAAACAAATATCCTGCCACCTCTAACAAGTACATGAGTACTTGATTTTTA110.11049723756906078No Hit
CTTGACCTCCTGGGCTCAAACGATCCTCCCACTTCAGCTACTCGGGAGGCTGAGGCAGGAGGATCACTTGA110.11049723756906078No Hit
CCATAAATAAGAACACTGTAATTGGAATTACTGGATTATTCTTCATTGAAGTTTAGTGAAATGAATAGAGA110.11049723756906078No Hit
ACATAAAGCAGTACTTATGAAATAATGTTGATAGGGTTATAACTTATAAAAGATGCAATTTGTATGATGAT110.11049723756906078No Hit
GTGTCCCCAGTCTCCACAGAAAACACTTCTTATGAGTATATATGTCATTAGGGTTTTCTATTGATAATACA110.11049723756906078No Hit
CACCAAACAAAAATGCCATTTTAAAAAAGGTGTATTTTTTCTTTTAGAATGTAAGCTCCTCAAGAGCAGGG110.11049723756906078No Hit
TAATACAGCTGTGCTAATCTCACATTTAGCCATGATAGATGATGGTTCTAGAGTGTACTTCCATTTGTAAG100.10045203415369162No Hit
TATTTATTGTGTTTTACAAACATGAGTATATATGTATGTATATGTATAAAACCAAACTTATATATATAAGA100.10045203415369162No Hit
AAAGAGGACTCCTCCATGTACCGAGAGTACATCAGGAACCGCTACCTGTGAAAAGAGCGCAGGTCCACCTG100.10045203415369162No Hit
GCTCATACGAACCTTCGGCTCTTCCACCACTGATTTACCACACACTGTTTTTTGGCTTGCTTATGTGTAGG100.10045203415369162No Hit
GTAAAGTAATCTTGGAATATAAAGAATTTCTTCAGGTTGAATTACCTAGAAGTTTGTCACTGACTTGTGTT100.10045203415369162No Hit
GTACTGAAGAGAGAGATTCAAACAAAGTGAGTAATCTACCGCAGTTTTCAGTTTTCTTGGTAATACCCCAA100.10045203415369162No Hit
GTCTTTTTACATTGGCTTTTGTTTTCTAAATGTTCTCCAAGCTATTGTATGTTTGGATTGCAGAAGAATTT100.10045203415369162No Hit
GCTATATACTTAAAATCCTAGGAAGTTATCTGTAACCAGTCTCTTGTCTCAGGCTCTTCACCTTGTTACCA100.10045203415369162No Hit
GTTTATGACCCTCGATCTCTATATGAAAGGCTACAGGAACAGAAGGACAGGAAGCAGCAGGAGTACGAGGA100.10045203415369162No Hit
CTCCTGGCTGTCAGTTTCTCAGTGGCAACTATTTACTGGTTGAAAATGGGAAGCAATAATATTCATCTGAC100.10045203415369162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)