FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002881448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002881448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51282
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3350.6532506532506532No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2270.4426504426504427No Hit
GTATAGAAGATAGAAAAATATAAAGCCAAAAATTGGATAAAATAGCACTGAAAAAATGAGGAAATTATTGG750.14625014625014623No Hit
GTATTGGAGAAGTATAGAAGATAGAAAAATATAAAGCCAAAAATTGGATAAAATAGCACTGAAAAAATGAG610.11895011895011894No Hit
CCATAAGATATATTAAAATAAATTCCTAATGTAGAAAGAAAATGAGATAGGTCAGAAACTCAGATCTGTGG580.11310011310011309No Hit
ATTTACATATGTGTAGCTTAGTAAGGCATTAACATAAGTACAAAAACTATGAAACAGATGCATATTTCCTC550.10725010725010724No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)