FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002881486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002881486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2465
Sequences flagged as poor quality0
Sequence length66
%GC18

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA110144.665314401622716No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA130.5273833671399595No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG100.4056795131845842No Hit
GCCTGGGCAACATGGCAAAACTCTAGCTCTACAAAAAATGCAAAAAAAATTTATCTGGGCATGGTG40.16227180527383367No Hit
GTTCAGGCTTTCTCCTTATTGATTTGCAAACATTGTGCAATGAGAAAACACTACATGGTCTAACTG40.16227180527383367No Hit
GCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTAT40.16227180527383367No Hit
GAAACTGGATCCTGGCAGCAAGGAGACCCAGACGCTGGTTCGAGAGTACTTTTCCTGGGAGGGGGC40.16227180527383367No Hit
CTCGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCAGGAGGCGGAGCTTGTAGTGAGCCGAGATCG40.16227180527383367No Hit
CCTGTGTTCAGGCATGTTCTAAGCACTGGGGATACAGCACTGAACAAGACCCCCACCTTTAAAGAT30.12170385395537525No Hit
CAAGGGAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.12170385395537525No Hit
CCTTACAAGTAAAGACAATGAAGAACAGTTGAAACATGCAAAATATGGAGCTTTTCATGTAATTAC30.12170385395537525No Hit
GGGGTTGGTTGGACTCTGCCCTTCCAAATAAACCTTGCTAAGTCCAAAAAAAAAAAAAAAAAAAAA30.12170385395537525No Hit
CGTTTTAAATGTGTGTGTTGCTAATTTTTTCCATAAGAATTGTAAACATTGAACTGAACAAATTAC30.12170385395537525No Hit
GGCATGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGTGGCAGGAGAATTGCTTGAACTGGGGGGGC30.12170385395537525No Hit
GACTTGTGGCCCCGGATTGCATCCAATGCTGGCAGCATTGCATGATTCTCCAGTATATTTGTAAAA30.12170385395537525No Hit
TTGTATATCCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.12170385395537525No Hit
CTCGGGAGGCTGAGGCAGGAGAATCATTTAAACCCGGGAGGCGGAGGTTACGGTGACTCAAGATAG30.12170385395537525No Hit
GAGCTGAGGTTGCGGTGAGCTGAGATTGTGCCGCTGCACTCCAGCCTGGCGACAAAGCACGACTCC30.12170385395537525No Hit
CCTCTCCCCAGTGTCCACAGTCACTGAGCCAGACGGTCGGTTGGAACATGAGACTCGAGGCTGAGC30.12170385395537525No Hit
CTCCAAGATCAAGTTCCCGCTGCCCCACCGGGTCCTGCGCCGTCAGCACAAGCCACGCTTCACCAC30.12170385395537525No Hit
GAAACGGCGTCATGCCCAGCCACTTCAGCCGAGGCTCCAAGAGTGTGGCCCGCCGGGTCCTCCAAG30.12170385395537525No Hit
GCCCTATACTCCCTCTACATATTTACCACAACACAATGGGGCTCACTCACCCACCACATTAACAAC30.12170385395537525No Hit
TGATTCATGAGATCTATACTGTTGGAAAACGCTTCAAAGAGGCAAATAACTTCCTGTGGCCCTTCA30.12170385395537525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)