FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002881896

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002881896
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39398
Sequences flagged as poor quality0
Sequence length71
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA14723.7362302654957102No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG740.18782679323823542No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG590.1497537946088634No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCT550.13960099497436418No Hit
CTCCTTTGCTTGTCCTCTTTGCCTTCGGTAATATGTATAAACTTACATCACGACTTTCTCTTAACAGCTGT490.12437179552261537No Hit
GGTATACTACGGTCAATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAA430.10914259607086654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)