FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002882009

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002882009
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35674
Sequences flagged as poor quality0
Sequence length71
%GC35

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA16004.485059146717497No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2160.6054829848068621No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA640.1794023658686999No Hit
GTGTTATAAACATTATCTCATTTAGAATGAGAATTATAAACTTGTCAGTTCTTCCCCACTAAACAAAATCA390.10932331670123899No Hit
CCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA360.10091383080114368No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)