FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002882036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002882036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1071
Sequences flagged as poor quality0
Sequence length66
%GC18

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA46543.417366946778714No Hit
GTAAGATGACTATAATGAACAATTTACTATATATTTTCAAATAGCCAGAAAATCGGATTTTGAATG40.3734827264239029No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40.3734827264239029No Hit
GTATGGTAGCACAGGCCTGTAATCCCAGCTACTCAGGAAGCTGAGGCAGAAGAATCACTTGAACCT40.3734827264239029No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.3734827264239029No Hit
CCACAGGGCTTTTGGGCACTGCCTCCTTGGGAAGTTAGTGGCCACAGAAGAGAGATGAAACCTGTA30.2801120448179272No Hit
CCTATTCAACACACACATGCTTCCCTTTCCTGAGTCCCATCCCTGCGTGATTTTGGGGGTGAAGAG30.2801120448179272No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCC30.2801120448179272No Hit
TCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAA30.2801120448179272No Hit
AAGATGGCCATGAACAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.2801120448179272No Hit
GTGGGTTTATTACTGTTATTAATGAATTCATAAATTACAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.2801120448179272No Hit
GATGTATGGTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.18674136321195145No Hit
GTGCAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.18674136321195145No Hit
CATAATTGCTCTTTATATTGTGTGTTATCTGACAAGATAGTTATTTAAGAAACATGGGAATTGCAG20.18674136321195145No Hit
TTCCCTACACGACTCTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.18674136321195145No Hit
ATAATAACCAATGGCACCAAATAAACACAAAACTACAAACAAAACTAAAAATATAAACCCACCAAC20.18674136321195145No Hit
CGTTTTCATCTCTACACGTTGAACGATGGGCATTTGATGTAGAACTACTGTACATAGCACAGTTCT20.18674136321195145No Hit
GCTTTTCTTGATAGGCCTAGTACAATCTTGGGAACAGGGTTACTGTATACTGAAGGTCTGACAGTA20.18674136321195145No Hit
GATTACAAGTGTGAGCCACAGCACCCGGCCTCCTCTGTTTCCTTTTAAGAAGATGAGGCTAAAAGC20.18674136321195145No Hit
TAAAATGCCTTTCCCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.18674136321195145No Hit
ACCTGGAGCAAGGTCTCTTCCCGGCTTGGCAATCTCAGCTGTGCCGGCGCTACGGGACCCGAGCCG20.18674136321195145No Hit
CTTTAGAAATATCCAGATTGGTGTGGGAAAACTCAAGGACAGAGAAATTACTTTCCCAATTCTCAG20.18674136321195145No Hit
ATTTTAAATGAGTTTGATGTACAGTAAATATTGATGACAATGACAGCTTTTAACTCTTCAAGTCAC20.18674136321195145No Hit
CTGTTAATTCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.18674136321195145No Hit
GGCCAATATTCCGGATGAACATAGATGCAAAAATCCTTAAGAAAATACTAGCTAACGGAATCCAAC20.18674136321195145No Hit
CACTAAGCCAATCACTTTATTGACTCCTAGCCGCAGACCTCCTCATTCTAACCTGAATCGGAGGAC20.18674136321195145No Hit
GTGTTTGCAAGGGAGGTGTTTCTGCCTGTCCCTGCCTGATGTCCCTGGTGGAGCAGGTACCTCCGG20.18674136321195145No Hit
GGGGGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.18674136321195145No Hit
CTACAAACCCCCCTGTAATTCAAGAAGAAAAACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.18674136321195145No Hit
TCCCTTCAGAGCCTGGTCACACAAGGGGCGAGCACCAGGCCAGCCTGGGACTGGCCAGAGCTGGGC20.18674136321195145No Hit
GGTTCAAGACCAGCCTGGGCAACACACAAGATCCCATCTCTACAAAAAAAAAATTATTTAGCCCAG20.18674136321195145No Hit
AGGAAACACAAGAAGAAACGCCTGGTGCAGAGCCCCAATTCCTACTTCATGGATGTGAAATGCCCA20.18674136321195145No Hit
GTACATAGCTGTTTGAAATGCCAGAATGACTTCTGACATTCCAAGTTTTTCACAAAATATATTTTA20.18674136321195145No Hit
ACTCCAGCCTGGCAACAAGAGCGAAACTCCATCTCAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.18674136321195145No Hit
GTTGTGTATAGATGCAAGATATTTATATATATTTTTGATTGTCAATATTAAATACAGACACTAAGT20.18674136321195145No Hit
TATGGAGACAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.18674136321195145No Hit
TATATATATAATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.18674136321195145No Hit
TAATAGATGTGAATGTTAATCACTGCTTGACTATGTTAATAAAGTTGTTTAACTAAAAAAAAAAAA20.18674136321195145No Hit
CTTTCCCTACACGACGCGGGAGGAAATAGAAGAGTGATGCTTATGTTAAGTCCTAACACTACAGTA20.18674136321195145No Hit
TCCCTACACGACTCGAAATACTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.18674136321195145No Hit
GTTTATTAATGAGGTGACTTTCACCTTAGGACAACTGTTGCATGCCAAGTTTTTTGTGTGTGTGAA20.18674136321195145No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)