FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002882039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002882039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2764
Sequences flagged as poor quality0
Sequence length66
%GC15

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA139550.47033285094067No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA70.2532561505065123No Hit
CAGTATCTGGCACAGAATAGGTACTCATTAAATGATAGCTGCTATTATTCATTCATTCATTAAACA70.2532561505065123No Hit
GTCTAACATATACCATGTGTCTGTTGTTCCTTTTGGGAAGTCAGCTAATAGAAATAGTTTAAATTA70.2532561505065123No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.21707670043415342No Hit
GCTGTAAAACACAGACCTTTATCAAGAGTAGGCAAAGATTTTCAGGATTCATATACAGATAGACTA60.21707670043415342No Hit
ACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGTGGTGAGCCGAGATT50.1808972503617945No Hit
ACTCGAGGACTGTATTTGTGACTAATTGTATAACAGGTTATTTTAGTTTCTGTTCTGTGGAAAGTG50.1808972503617945No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA50.1808972503617945No Hit
GTCACCTTGTGATTTTTAAATTTTTATTTTAATAAAGCTAATCAATTTCTAAAAAAAAAAAAAAAA40.1447178002894356No Hit
GAGAAAGAACAGAGAAGTGACAGCTAGGGGTTGAGAGGGGCCAGAAAAACATGAATGCAGGCAGAT40.1447178002894356No Hit
TCCCTACACGACGCGGGGGAAGGCTTGGAGTAGACAAAAGGAAAGGTCTCAGCTTGTATATAGAGA40.1447178002894356No Hit
AAAGTAGTCTAACATATACCATGTGTCTGTTGTTCCTTTTGGGAAGTCAGCTAATAGAAATAGTTT40.1447178002894356No Hit
CCTACACGACGCGGGAGGTCGCAAAGGTCATGCTGTTGGTGATATTCCTGGAGTCCGCTTTAAGAT40.1447178002894356No Hit
GGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.10853835021707671No Hit
GAGCCATGTACCAGTGTACTGCTTTCAACTTAAATCACTGAGGCATTTTTACTACTATTCTGTTAA30.10853835021707671No Hit
AACAGGATCAGCGCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.10853835021707671No Hit
GTTAATAAACAGTACCTGCTCTCAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.10853835021707671No Hit
AAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.10853835021707671No Hit
AAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.10853835021707671No Hit
CAATAAAGCATTAAAAGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.10853835021707671No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCC30.10853835021707671No Hit
GCCCCCTGAGGCAGGAGGATTGCTTGAAACCAGGAGTTTGAGGCTACAGTGAGCTATGATTGAGCT30.10853835021707671No Hit
TCCCTACACGACGCGGGATTTCAGTGAAATATTTAATATATTTAAATATCAATAAAATCAAACTCT30.10853835021707671No Hit
GGGATAAACCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.10853835021707671No Hit
TCTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATGATTTGAGAAGCCTTC30.10853835021707671No Hit
ACATAATATTTGGTAGCTTGTAAATGAAATAAAGAATAAAGTTTTATTTATGGCTAAAAAAAAAAA30.10853835021707671No Hit
CTCAGGAGGCTGAGGGAGGAGAATCACTTGAACCCAGGAGGCAGAAGTTGCAGTGAGCTAAGATTG30.10853835021707671No Hit
GAGTCCTTGTCTCTACTAAAAATGAAAAAAAAATTAGCCTGGTATGATGACAAGTGAGTGAGGAGG30.10853835021707671No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)