FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002882092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002882092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29779
Sequences flagged as poor quality0
Sequence length71
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2360.7925047852513516No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2030.6816884381611202No Hit
AGATACAGGAAGCTTAAAGATACCCAAATAGATTGAACCCGAAAAAGTCTTCCCCAAGGTATATTATCACT530.17797776956915948No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG430.14439705832969543No Hit
TATTTATGCTGTCTGAAGGTCACGATCATGTTACCATATCAAGCTGAAAATGTCACCACTATCTGGAGATT420.14103898720574903No Hit
CATTAGATGAAGATTCAGAAGGTAGTGATGATGAACTTGGTAACCTGGATGACGATGAAGTTTCTTTAGGA390.13096477383390978No Hit
CTATTAAAGGTTCGTTTGTTCAACGATTAAAGTCCTACGTGATCTGAGTTCAGACCGGAGTAATCCAGGTC320.10745827596628497No Hit
GTGACATTGTCTTCAAGAGAATCAGCAAGAGAATTTAAACAAGTCTGCATTTCATATTATTTTAGTGTGTA300.10074213371839215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)