FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002882108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002882108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31644
Sequences flagged as poor quality0
Sequence length71
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA7372.3290355201618No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1820.5751485273669574No Hit
CTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATATGAAG390.12324611300720517No Hit
ATATCTTTCGATAAACAACAAGGTGGTGTGATCTTAATATATTTGAAAAAAACTTCATTCTCGTGAGTCAT340.1074453292883327No Hit
ATTGAATACTGGACTGGAAGTGAAAAACAGAATGATTACACGGTACTTGAAGTATAGTTTCTGCTGAATGT330.10428517254455821No Hit
GATTATAGTTTGTTTGTTTCCTAAATTGTGATATTTTTGAAAGGACACTAAGAATAATTGTACCAGAACTC330.10428517254455821No Hit
TGTTAAGATAGTTAAGCGTGCATAAGTTAACTTCCAATTTACATACTCTGCTTAGAATTTGGGGGAAAATT330.10428517254455821No Hit
GTTGTAAACAAACAAGTTAAGGGCAAGATTCTTGCCAAGAGAATTAATGTGCGTATTGAGCACATTAAGCA320.10112501580078373No Hit
ATATGAACATGTTTTCATGACTATTCCTTGATGGTTTTTTATTTGCTTGTTTTAAGACGGTCTCGCTCTTC320.10112501580078373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)