FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002882494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002882494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16783
Sequences flagged as poor quality0
Sequence length71
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA8535.082523982601442No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG590.3515462074718465No Hit
ATATATGACCATGTCTGAAATGTCAGTTCTCTAGCATAATTTGTATTGAAATGAAACCACCAGTGTTATCA370.2204611809569207No Hit
TCCCTACACGACGCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA270.16087707799559078No Hit
TTCCCTACACGACGCGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA220.13108502651492582No Hit
ACTATGCAGAGGCATTTTAGAGACATTGGCATTGCCATGCCCTCTTTGGAGGGTAGAAGAGGCAAAACACT210.1251266162187928No Hit
ATCTAATACAGTATTTGTTGCATTTAAACAAACTAGACATTTTCTTACGGAAAAATTATGAAATACAGCAT210.1251266162187928No Hit
CATTATTAAAATACTTTGCCTTGGAATAGATTATAAATGAGAAAATGGAATGTTTGCATCCCTTTAAAAAT210.1251266162187928No Hit
TCCCTACACGACGCGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA210.1251266162187928No Hit
GTGCATATTAGTGGACAGCACTTAGTAGCTGTGGAGGAAGATGCAGAGTCAGAAGATGAAGAGGAGGAGGA190.11320979562652685No Hit
ACAAAGCACTGCAGCTTCTCCATGATATCAGAGAGCAGAGCCGGAAGCTCCAAGAAATCAAAGAGCAGGTA190.11320979562652685No Hit
GCATTCCTGTATAGGGAGAAATATGGTTTTGTGGAACCTTGTTGCGATGTAAAGTGTACTTCTTAAGATAA190.11320979562652685No Hit
GCTTAAAGCGAAGTTTGGAGCAAGCACGGATGGAGGTGTCCCAGGAGGATGACAAAGCACTGCAGCTTCTC180.10725138533039386No Hit
GAAATATAGCTTCTGACAACTATGCAGAGGCATTTTAGAGACATTGGCATTGCCATGCCCTCTTTGGAGGG180.10725138533039386No Hit
GTATAAGAAGGGCAAGGATTCTTTGTATGCCCAGGGAAGGAGGCGCTATGATCGGAAGCAGAGTGGCTATG170.10129297503426087No Hit
ACAGTAAGAGTGAAACATTCACAAAGATTTGCGTTAATGAAGACTACACAGAAAACCTTTCTAAGGATTTG170.10129297503426087No Hit
GTGTAAGATGAGTTGCTATTTTTCTGATGCTCATTCTGATACAACTATTTTTCGTGTCAAATATCTACTGT170.10129297503426087No Hit
TATATGACCATGTCTGAAATGTCAGTTCTCTAGCATAATTTGTATTGAAATGAAACCACCAGTGTTATCAA170.10129297503426087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)