FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002882568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002882568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13796
Sequences flagged as poor quality0
Sequence length71
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2141.5511742534067845No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1190.8625688605392867No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAG530.3841693244418672No Hit
TAATAAACTATTCTAAGTGTTTAACCTGAGCTGATTACAATAGAATTGTTTCATTTATTAACACATTTTAT340.24644824586836767No Hit
GCACTGATGAAAGAAATTGAAGAAGACACAAAAAACTGGAAAGGTATGCCATGTTAATGATTGGAAGAATC200.14496955639315745No Hit
CTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTTTAATAGCTTAAGATTTTAAGAGAAAATATGAAG190.13772107857349958No Hit
CTATGAGACAGAGGACTTCTAACCATCTGGGAGGAGTTGAGAGAGATCATTTGATGGAAGAATGGTCCTCC180.1304726007538417No Hit
GATTAATACAACTACTTAAAAAATATAGTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACG180.1304726007538417No Hit
TATTTGTCTAACACAAAACAAAGGTAAGATAGGAAAATGACCTAGAAGTTGAGAAATAACTCAAATCCTTA170.12322412293418383No Hit
GTTTATTTCATCATAGCCAGTTTTGCCATTTTATAGACAAAAACTTGATACTTTTGAGAGTTTAATTAAAC160.11597564511452595No Hit
ATGCTCTGAAATCTGTGGAGCAAACCACAGTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCT160.11597564511452595No Hit
ACTAACTGTGGTTGTTTAATTACAGAGGGAACATCCCTACGCTAAACAGGTACCGTATGTTTAGTTTCTTT160.11597564511452595No Hit
GTTTCATGCCCATCGTCCTAGAATTAATTCCCCTAAAAATCTTTGAAATAGGGCCCGTATTTACCCTATAA150.10872716729486809No Hit
CTCATGGGGTAGATATGAGACTTATGTGAGATCATGTTTGCATAGAGTTCTAGAAATAGAATTACCAAGGT140.1014786894752102No Hit
CCAGAAGGCCCTTGCAGAAGATGCTACTGTGTATGAATATGACAGTATTTATGATGAAATGCAGAAAAAAA140.1014786894752102No Hit
AAAGAAGACCAAACTGAGTACTTGGAGGAACGAAGAATAAAGGAGATTGTGAAGAAACATTCTCAGTTTAT140.1014786894752102No Hit
GCGGTGAACAAAGCATAGATGTCCATTTTCTCCACTGCTATTCAATATAGTACTGGAATTTCTAGCTAGGG140.1014786894752102No Hit
GAGGAACAGCTCTTTGGACACTAGAAAAAAACCTTGTAGAGAGAGTAAAAAATTTAACACCCATAGTAGGC140.1014786894752102No Hit
TTCAAGAATATCCCAGGAAGGTCTGTAAGAAGCCTTGTTTCATTTCTATAGCAGTTTTAAAGCAAGTCAGT140.1014786894752102No Hit
TAAATACTTAATACAAGAATAAATACAAATATAGGAACAAGTAAGATACACACAAAATGCAATTCACCAGT140.1014786894752102No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)