FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002883018

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002883018
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12946
Sequences flagged as poor quality0
Sequence length71
%GC38

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA470.36304650084968326No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG310.23945620268808898No Hit
CCCTATAGAAGAACTAATGTTAGTATAAGTAACATGAAAACATTCTCCTCCGCATAAGCCTGCGTCAGATT210.16221226633709254No Hit
GATCTAAGAGTTACCTGGCTACAGAAAGAAGATGCCAGATGACACTTAAGACCTACTTGTGATATTTAAAT160.12359029816159431No Hit
GTATAAGAAAATGGATGGACTGAACCAATTAGAATTGATACCAGTGAAATTTTTATATTGCTTACAATTGG160.12359029816159431No Hit
ATATAAAATAATATATATGAAAAAAGCTTCTAGAAGTTATAACTGAGTTCAGTTAAATTTCAGGATACAAG150.11586590452649467No Hit
ACTTAAGACAATGGGACTGATGTCATCTTGAGCTCTTCATTTATTTTGACTGTGATTTATTTGGAGTGGAG150.11586590452649467No Hit
TTCTAATTCAGATCATCAAACTGATTATATAGAAGAGTTGGCTTTAAAATGTTTGCAAATGTCTTTTTTTT150.11586590452649467No Hit
TATTTATGCTGTCTGAAGGTCACGATCATGTTACCATATCAAGCTGAAAATGTCACCACTATCTGGAGATT150.11586590452649467No Hit
GAGGAGGAAGAAGAAGGTGATGGTGAGGAAGAGGATGGAGATGAAGATGAGGAAGCTGAGTCAGCTACGGG150.11586590452649467No Hit
GACCAGACAGGCTTTTTCAAGCTTCCAAGTCATCTCAGTTTGAAAGACTATGTCTGACCCTTGTCTTGGCC130.10041711725629539No Hit
GATAGAAGATTATCTGCTAAGTCCAGGCATTTTTATGGTGTAGATTGAAATAATAGTACACTTCTGAATTT130.10041711725629539No Hit
ATGTTATGATTTGTAACATTCACACAACACCTCACTTTTGAATCTATAAAAGAATTGCACGTATGAGAAAC130.10041711725629539No Hit
AAATAGTACCTTTGGAATATATTTAGTTCATCATTTGAGCTGCCTTCATACTGGTTTCCTCAGCCTTCCTT130.10041711725629539No Hit
ACTTTATATAATCAATGAAATTGCTAGACATGTTTTAGCAGGACTTTTCTAGGAAAGACTTATGTATAATT130.10041711725629539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)