FastQCFastQC Report
Thu 23 Mar 2023
EGAF00003029713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003029713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71208104
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22821843.204949818633003No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17855142.5074589824776123No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA1556860.2186352272488536No Hit
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1426200.20028619214464688No Hit
CTTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1058660.14867128044864106No Hit
ACACACACACACACACACACACACACACACACACACACACACACACACAC882120.12387915847331084No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG762880.1071338734141833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)