FastQCFastQC Report
Wed 22 Mar 2023
EGAF00003029714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003029714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71208104
Sequences flagged as poor quality0
Sequence length76
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20879902.9322364769043703No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA17583902.4693678124051726No Hit
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1650040.2317208164958303No Hit
CTTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT959100.13468972576492136No Hit
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG858460.12055650295084391No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA849140.11924766315923817No Hit
ACACACACACACACACACACACACACACACACACACACACACACACACAC715360.10046047567844245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)