FastQCFastQC Report
Sat 13 May 2023
EGAF00003029720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003029720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40134697
Sequences flagged as poor quality0
Sequence length76
%GC42

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5031311.253606075561004No Hit
CTTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3237310.8066112969533569No Hit
TGTTTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG1510020.3762380465959417No Hit
CTTTGTGTTTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT1371510.34172676076263886No Hit
GTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1188220.29605804673198355No Hit
ACTTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1088190.27113447499055493No Hit
ACTTTGTGTTTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG793330.19766687163478522No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA737920.18386086233564938No Hit
TTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT607340.15132542298749635No Hit
TTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT523050.13032364490007237No Hit
TGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT463470.11547863435969132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)