FastQCFastQC Report
Tue 27 Sep 2022
EGAF00003090123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003090123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29209440
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT813710.2785777474679419No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT498740.17074616973142928No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT495530.1696472099430869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)