FastQCFastQC Report
Sun 14 May 2023
EGAF00003127455

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003127455
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50466984
Sequences flagged as poor quality0
Sequence length24-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGTTTGGAGGTTCTAGC933070.18488721259824048No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC766290.1518398642565999No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT709510.14058894424917487No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA708500.14038881340719706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)