FastQCFastQC Report
Wed 27 Sep 2023
EGAF00003211224

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003211224
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52283089
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1482430.2835390999946465No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG848110.16221497547706104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)