FastQCFastQC Report
Mon 3 Apr 2023
EGAF00003211225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003211225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39110608
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCTGGAGG1125970.2878937601788241No Hit
CTGGGCTTGTGATTCACGTTGCAGATGTAGGTCTGGGTGCCCAAGCTGCT913180.23348652621304175No Hit
CTCAACTTTCTTGTCCACCTTGGTGTTGCTGGGCTTGTGATTCACGTTGC826960.21144135626835564No Hit
CCCAGCTTCATCTTCAACGTTGTGGAAAGGGACTGTACATCATGGGGCAG809760.2070435724241362No Hit
CTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTCGCTGGGATAGA623730.15947847192761616No Hit
CTCGTCTTGCTGTGTCATGCCCGCCTCTTCACGGGCAGGTCAATTTCACT567190.14502203596528082No Hit
CTCGTTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCGTCCCAGTTGG557780.14261603910632123No Hit
CTCATCGTTAATCTTGCCTTGAAGTTTCTCATCTTCAACAGTTGCTTTCA543280.13890860505160135No Hit
CTTGGCATTATGCACCTCCACGCCGTCCACGTACCAGTTGAACTTGACCT516290.1320076640076779No Hit
CTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACTG485820.1242169387906217No Hit
CTGTGATTGGAGGAGGTGAGAGGAGGTACCGTGCTATGGTGAGTGCTACT481480.12310726542527797No Hit
CTGGGTGCCAGGGCAGTGATCTCCTTCTGCATCCTGTCGGCAATGCCAGG470690.12034842311835192No Hit
CTCGTGGTTTTCGGTGCTCTACACGTTCAGAGAAACTTCTCTAGTAACAC435600.1113764327059298No Hit
GCTCGTTGTAGAAGGTGTGGTGCCAGATCTTCTCCATGTCGTCCCAGTTG423720.10833889363213171No Hit
CTCGTGTGTTGTAACCACTCTCCCATTTGGCCAAACACATCCAGTTTGCT415760.10630364017864412No Hit
GCTCCCTTCATGCGTGACCTGGCAGCTGTAGCTTCTGTGGGACTTCCACT391460.10009049207314803No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC391450.1000879352220758No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)