FastQCFastQC Report
Tue 19 Sep 2023
EGAF00003211252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003211252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49522316
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT1539380.31084572054344145No Hit
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG544240.1098979296525631No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)