FastQCFastQC Report
Fri 3 May 2024
EGAF00003211256

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003211256
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35086974
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGT586940.16728145322534796No Hit
CAGAAGTGGATTCAGTGAATCTAGGAAGACAGCAGCAGACAGGATTCCAG502440.1431984416780997No Hit
CTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCC476350.13576263373410313No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)