FastQCFastQC Report
Sun 14 May 2023
EGAF00003211261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003211261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30075206
Sequences flagged as poor quality0
Sequence length101
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC1127870.3750165501775782No Hit
GCCGGCTTCACGCCCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTC805310.26776541447463403No Hit
CAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACACGT531920.17686329397045528No Hit
CTCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCGGTGCTCTACAC505700.16814514919698306No Hit
CTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATT466350.15506128204076142No Hit
CTGGATTCTTCGCTGACGCCTGAGCTTGTTGTGGTTGCAGGTGAGAGTGT454890.15125083432512482No Hit
CTGCATGGTTTGTCTCCCCAGTCATTGTCCACAGGACTCTGGGAAGCTGT434320.1444113134254176No Hit
CCGGCTTCACGCCCAGGAGAAAACGCTACCTCTCTTCCTCGTGGTTTTCG430050.1429915392765722No Hit
CTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCT391090.13003734704261044No Hit
GTCAGTGTTGTGTGTAGCGAGCCAGTGCTGCTGTGGGTGGGTGTAGATGC342780.11397428167241813No Hit
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG332120.11042983379731464No Hit
GTGGATTCTTCACCGACGCCTAGGCTTGTCATGCTGGCAGGTGAGAGTGT312470.10389621271422048No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)