FastQCFastQC Report
Tue 26 Sep 2023
EGAF00003211267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003211267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33387982
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATTTTTGTCAGTGGCCAGTTTGTGCAGTTCCAGTAGTGACTGATTCA465980.13956518845613372No Hit
CCCAGATGAAGGCGTCTTTCCCCAGGGTCAGGGTTCCATCACTTGGCCCA442710.13259561479337087No Hit
CGGGAATCTTCTCTGTCAGCCTGTACATCTAAAGGCATGAAGCACTCAAT401100.12013304667529773No Hit
CTGGGTGCCAGGGCAGTGATCTCCTTCTGCATCCTGTCGGCAATGCCAGG334610.10021869545754516No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)