FastQCFastQC Report
Tue 19 Apr 2022
EGAF00003247272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003247272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398155772
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG1082200.040.2085769
GAGCGTC1365900.032.000758
ATCGGAA1589100.028.5387861
AGAGCGT1638400.026.8686057
TCGGAAG1697750.026.6851332
GATCGGA1112350.026.0559921
CGGAAGA1898950.023.8409673
AAGAGCG1960850.023.0526266
CGCCGTA701500.020.25044345-49
GTCGCCG835700.017.35233740-44
GCCGTAT928200.015.58568545-49
GGTCGCC985100.014.93407340-44
TGGTCGC994700.014.6835540-44
CCGTATC1025100.014.21706345-49
GCGTCGT1026400.014.01228110-14
CGTCGTG1048550.013.75637910-14
GTGGTCG1097400.013.42035940-44
CGTATCA1119550.013.07980645-49
GTCGTGT1298950.011.34898410-14
TCGTGTA1338700.011.04665410-14
Produced by FastQC (version 0.11.5)