FastQCFastQC Report
Mon 6 Mar 2023
EGAF00003247318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003247318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64977373
Sequences flagged as poor quality0
Sequence length126
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTACCCCACAACCTAAACCAATTCAACCTCTCTCCACTAAAACCCTCA1732330.2666051149836421No Hit
TTGGAAGGTGAAGGGGTAGGATGGGTGTTTGGGTTTTTAGTTTTTTTGTT1203110.1851583011827825No Hit
GATTTGGGGGTTTGGGTTGTGTTTTTTTGTTTGTGTGTTGTTTGTGTTTT1193540.1836854807903668No Hit
CCAAACCGAACTCCCAATAAATTCACAAACACAAACACCCAAAACCACAC819470.1261162097150342No Hit
GATTCGGGGGTTTGGGTTGTGTTTTTTTGTTTGTGTGTTGTTTGTGTTTT722970.11126488600885728No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN672000.10342061689690041No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)