FastQCFastQC Report
Tue 19 Apr 2022
EGAF00003247361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003247361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411462024
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1311800.021.355511
TCGGAAG1424500.019.7379172
CGGAAGA1650550.017.0438373
TATGCCG589550.010.37874245-49
CGTATGC699550.08.99770740-44
CTCGTAT660150.08.50239840-44
TGCCGTC802400.07.927377745-49
TCTCGTA712300.07.855479740-44
AGAGCAC3927650.07.7511997
ATGCCGT831350.07.72806445-49
GCCGTCT855900.07.397978345-49
AGCACAC4167050.07.32850559
TCGTATG803000.07.20112740-44
GAGCACA4303250.07.12518558
GAAGAGC4532900.06.79938275
CGTCTTC1117250.05.90363750-54
ATCTCGT917800.05.824459635-39
CGTCTGA1184000.05.46607915-19
ACACGTC1190250.05.465331610-14
CCGTCTT1140600.05.383601745-49
Produced by FastQC (version 0.11.5)