EGAF00003247364 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00003247364
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	409612460
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCG	101245	0.0	22.39071	9
GAGCGTC	133275	0.0	17.255	8
ATCGGAA	163370	0.0	14.57898	1
AGAGCGT	167880	0.0	13.966375	7
TCGGAAG	174940	0.0	13.603094	2
CGGAAGA	200195	0.0	11.98776	3
AAGAGCG	206750	0.0	11.579092	6
CGCCGTA	51640	0.0	9.610696	45-49
GTCGCCG	68490	0.0	7.6791263	40-44
TCGCCGT	60550	0.0	7.6494174	40-44
GCCGTAT	75225	0.0	6.93286	45-49
CCGTATC	85740	0.0	6.283859	45-49
GGTCGCC	87335	0.0	6.231285	40-44
TGGTCGC	86730	0.0	6.182821	40-44
CGTATCA	94855	0.0	5.693774	45-49
GTGGTCG	96160	0.0	5.6036344	40-44
GAAGAGC	476340	0.0	5.590598	5
GCGTCGT	92085	0.0	5.4102306	10-14
CGTCGTG	95590	0.0	5.2255044	10-14