FastQCFastQC Report
Tue 19 Apr 2022
EGAF00003247448

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003247448
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences406826137
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG1074100.031.867479
GAGCGTC1389000.024.7888578
ATCGGAA1688800.021.5657831
AGAGCGT1655250.021.0467787
TCGGAAG1809750.020.127352
CGGAAGA1960850.018.5282573
AAGAGCG2006500.018.0774756
CGCCGTA513300.013.8137645-49
GTCGCCG655650.011.29901840-44
TCGCCGT592200.011.17787640-44
GCCGTAT745450.09.90468445-49
GGTCGCC829350.09.18950240-44
TGGTCGC826750.09.09039340-44
CCGTATC842950.08.84676745-49
CGTATCA915900.08.32732945-49
GTGGTCG929650.08.11695440-44
GAAGAGC4796400.08.1063895
TCCGATC311500.07.3265841
GCGTCGT1014100.07.06049310-14
CGTCGTG1034050.06.94530810-14
Produced by FastQC (version 0.11.5)