FastQCFastQC Report
Tue 19 Apr 2022
EGAF00003248393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003248393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433365005
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGCGTCG1365600.022.4120439
GAGCGTC1688850.018.2219858
ATCGGAA2092550.017.4681381
TCGGAAG2214200.016.3272972
AGAGCGT1993000.015.5721227
CGGAAGA2406150.015.1273543
AAGAGCG2452400.014.45548256
AGCGGCG498400.013.5121499
GAGCGGC740800.09.423988
CGCCGTA708300.08.50603545-49
GTCGCCG915500.07.384745640-44
AGAGCGG980850.07.2062927
TCGCCGT764250.07.116438440-44
ATCGGGA492550.07.0706061
GAAGAGC5385300.07.06478455
GCCGTAT931100.06.771141545-49
GGTCGCC1085900.06.411476640-44
TGGTCGC1031200.06.369223640-44
CCGTATC1031300.06.253832345-49
CGTATCA1104100.05.94126645-49
Produced by FastQC (version 0.11.5)