FastQCFastQC Report
Tue 19 Apr 2022
EGAF00003248394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003248394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421353177
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGAA1663150.043.5808071
TCGGAAG1762200.041.090062
CGGAAGA1940300.037.3768773
CCGTACG800250.019.51109530-34
CGTACGT810700.019.29535730-34
AGAGCAC4309100.017.27537
TATGCCG921500.017.03426245-49
AGCACAC4598750.016.272829
GAGCACA4690350.015.9885338
GAAGAGC4840450.015.57998855
ACCGTAC1026050.015.38829330-34
CGTATGC1036050.015.10609545-49
CTCGTAT968550.014.77786640-44
TCTCGTA1007450.014.21013640-44
ATGCCGT1171850.013.5250545-49
CGTAATC1180250.013.45281235-39
GCCGTCT1184750.013.15070550-54
TGCCGTC1137500.012.69692845-49
GTACGTA1151450.012.68889130-34
GTCACCG1282250.012.3905825-29
Produced by FastQC (version 0.11.5)